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LOC18771735 40S ribosomal protein S28 [ Prunus persica (peach) ]

Gene ID: 18771735, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18771735
Gene description
40S ribosomal protein S28
Locus tag
PRUPE_7G086800
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Also known as
rps28.1; rps28.2
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Genomic context

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See LOC18771735 in Genome Data Viewer
Location:
chromosome: G7
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G7 NC_034015.1 (12138231..12139605, complement)

Chromosome G7 - NC_034015.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g20710, mitochondrial Neighboring gene 40S ribosomal protein S5 Neighboring gene 40S ribosomal protein S5 Neighboring gene protein-lysine N-methyltransferase N6AMT2 Neighboring gene rhomboid-like protein 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034015.1 Chromosome G7 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and molecular characterisation of the gene encoding the cytoplasmic ribosomal protein S28 in Prunus persica [L.]] Batsch. Giannino D, et al. Mol Gen Genet, 2000 Mar. PMID 10778738
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S28
Names
ribosomal protein S28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034015.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    12138231..12139605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007202775.2 → XP_007202837.1  40S ribosomal protein S28

    See identical proteins and their annotated locations for XP_007202837.1

    UniProtKB/TrEMBL
    Q9ZNS5, Q9ZRW5
    Conserved Domains (1) summary
    cd04457
    Location:6 → 65
    S1_S28E; S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control ...
Nucleotide Protein Strain
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