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LOC18770016 transcription factor SPATULA [ Prunus persica (peach) ]

Gene ID: 18770016, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18770016
Gene description
transcription factor SPATULA
Locus tag
PRUPE_7G131400
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18770016 in Genome Data Viewer
Location:
chromosome: G7
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G7 NC_034015.1 (15053885..15057242)

Chromosome G7 - NC_034015.1Genomic Context describing neighboring genes Neighboring gene caffeoyl-CoA O-methyltransferase Neighboring gene putative F-box protein At1g49610 Neighboring gene nicotinate phosphoribosyltransferase 2 Neighboring gene DNA polymerase alpha catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034015.1 Chromosome G7 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The study of a SPATULA-like bHLH transcription factor expressed during peach (Prunus persica) fruit development. Tani E, et al. Plant Physiol Biochem, 2011 Jun. PMID 21324706
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPATULA
Names
ALCATRAZ/SPATULA-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034015.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    15053885..15057242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007204500.2 → XP_007204562.2  transcription factor SPATULA isoform X2

    UniProtKB/TrEMBL
    A0A251NAV3, A0A251NCY4
    Conserved Domains (1) summary
    smart00353
    Location:226 → 274
    HLH; helix loop helix domain

  2. XM_020568614.1 → XP_020424203.1  transcription factor SPATULA isoform X1

    UniProtKB/TrEMBL
    A0A251NAV1, A0A251NAW8
    Conserved Domains (1) summary
    smart00353
    Location:226 → 274
    HLH; helix loop helix domain
Nucleotide Protein Strain
Heading Accession and Version

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