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LOC18769616 auxin-binding protein ABP20 [ Prunus persica (peach) ]

Gene ID: 18769616, updated on 6-Jun-2024

Summary

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Gene symbol
LOC18769616
Gene description
auxin-binding protein ABP20
Locus tag
PRUPE_7G200100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Also known as
dNOX; ABP20; ENOX5
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Genomic context

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See LOC18769616 in Genome Data Viewer
Location:
chromosome: G7
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G7 NC_034015.1 (18714416..18715466, complement)

Chromosome G7 - NC_034015.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g04910 Neighboring gene MOB kinase activator-like 1A Neighboring gene auxin-binding protein ABP19b Neighboring gene auxin-binding protein ABP19a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034015.1 Chromosome G7 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of genes encoding auxin-binding proteins (ABP19/20) from peach: significant peptide sequence similarity with germin-like proteins. Ohmiya A, et al. Plant Cell Physiol, 1998 May. PMID 9664714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin-binding protein ABP20
Names
external NADH oxidase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424958.1 → NP_001411887.1  auxin-binding protein ABP20 precursor

    Status: VALIDATED

    Source sequence(s)
    DN553441, DN554260, GE653207, U81162
    UniProtKB/Swiss-Prot
    O04011
    UniProtKB/TrEMBL
    A0A0B7P435, M5WAE7

RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034015.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    18714416..18715466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007202509.2 → XP_007202571.1  auxin-binding protein ABP20

    Conserved Domains (1) summary
    pfam00190
    Location:53 → 199
    Cupin_1; Cupin
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O04011.1 GenPept UniProtKB/Swiss-Prot:O04011

Gene LinkOut

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