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LOC18613841 mannan endo-1,4-beta-mannosidase 4 [ Theobroma cacao (cacao) ]

Gene ID: 18613841, updated on 19-Jun-2024

Summary

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Gene symbol
LOC18613841
Gene description
mannan endo-1,4-beta-mannosidase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18613841 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 1 NC_030850.1 (32844022..32847356)

Chromosome 1 - NC_030850.1Genomic Context describing neighboring genes Neighboring gene putative expansin-A17 Neighboring gene uncharacterized LOC18613839 Neighboring gene LRR receptor-like serine/threonine-protein kinase RPK2 Neighboring gene glucose-1-phosphate adenylyltransferase large subunit 1 Neighboring gene paladin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030850.1 Chromosome 1 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannan endo-1,4-beta-mannosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030850.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    32844022..32847356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007051279.2 → XP_007051341.1  mannan endo-1,4-beta-mannosidase 4 isoform X1

    See identical proteins and their annotated locations for XP_007051341.1

    UniProtKB/TrEMBL
    A0A061DRR1
    Conserved Domains (1) summary
    cl23725
    Location:50 → 333
    Glyco_hydro_1; Glycosyl hydrolase family 1

  2. XM_018114138.1 → XP_017969627.1  mannan endo-1,4-beta-mannosidase 4 isoform X2

Nucleotide Protein
Heading Accession and Version

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