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LOC18591879 probable beta-1,4-xylosyltransferase IRX9H [ Theobroma cacao (cacao) ]

Gene ID: 18591879, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18591879
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18591879 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 8 NC_030857.1 (3783205..3786270, complement)

Chromosome 8 - NC_030857.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18591877 Neighboring gene disease resistance protein RGA2 Neighboring gene soluble inorganic pyrophosphatase 6, chloroplastic Neighboring gene uncharacterized LOC18591881

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030857.1 Chromosome 8 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030857.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    3783205..3786270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007018290.2 → XP_007018352.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    See identical proteins and their annotated locations for XP_007018352.1

    UniProtKB/TrEMBL
    A0A061FEU9, A0A061FFS6
    Conserved Domains (1) summary
    cd00218
    Location:144 → 373
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_007018291.2 → XP_007018353.1  probable beta-1,4-xylosyltransferase IRX9H isoform X2

    See identical proteins and their annotated locations for XP_007018353.1

    UniProtKB/TrEMBL
    A0A061FEU9, A0A061FF94
    Conserved Domains (1) summary
    cd00218
    Location:144 → 373
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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