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LOC18444395 digalactosyldiacylglycerol synthase 1, chloroplastic [ Amborella trichopoda ]

Gene ID: 18444395, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18444395
Gene description
digalactosyldiacylglycerol synthase 1, chloroplastic
Locus tag
AMTR_s00030p00179690
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18444395 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499930.1 (3002437..3010176, complement)

NW_006499930.1Genomic Context describing neighboring genes Neighboring gene transcription factor LHW Neighboring gene aluminum-activated malate transporter 10 Neighboring gene uncharacterized LOC110008119 Neighboring gene histone deacetylase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006499930.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables digalactosyldiacylglycerol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
digalactosyldiacylglycerol synthase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006499930.1 Reference AMTR1.0 Primary Assembly

    Range
    3002437..3010176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006854568.3 → XP_006854630.1  digalactosyldiacylglycerol synthase 1, chloroplastic

    See identical proteins and their annotated locations for XP_006854630.1

    UniProtKB/TrEMBL
    U5D3W3
    Conserved Domains (2) summary
    PLN02501
    Location:8 → 774
    PLN02501; digalactosyldiacylglycerol synthase
    cl10013
    Location:301 → 765
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
Heading Accession and Version

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