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LOC18442423 probable beta-1,4-xylosyltransferase IRX9H [ Amborella trichopoda ]

Gene ID: 18442423, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18442423
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
AMTR_s00033p00038120
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18442423 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499858.1 (301362..317869)

NW_006499858.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110007952 Neighboring gene symplekin Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic Neighboring gene probable sphingolipid transporter spinster homolog 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006499858.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006499858.1 Reference AMTR1.0 Primary Assembly

    Range
    301362..317869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020672495.1 → XP_020528154.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    U5CM29
    Conserved Domains (1) summary
    cd00218
    Location:199 → 430
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_020672496.1 → XP_020528155.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    U5CM29
    Conserved Domains (1) summary
    cd00218
    Location:199 → 430
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_020672497.1 → XP_020528156.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    U5CM29
    Conserved Domains (1) summary
    cd00218
    Location:199 → 430
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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