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LOC18440781 UDP-N-acetylglucosamine transferase subunit ALG13 homolog [ Amborella trichopoda ]

Gene ID: 18440781, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18440781
Gene description
UDP-N-acetylglucosamine transferase subunit ALG13 homolog
Locus tag
AMTR_s00025p00209630
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18440781 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499801.1 (4035406..4042616, complement)

NW_006499801.1Genomic Context describing neighboring genes Neighboring gene paramyosin Neighboring gene preprotein translocase subunit SECE1 Neighboring gene U3 small nucleolar RNA-associated protein 21 homolog Neighboring gene cycloartenol synthase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006499801.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of UDP-N-acetylglucosamine transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006499801.1 Reference AMTR1.0 Primary Assembly

    Range
    4035406..4042616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020671319.1 → XP_020526978.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X2

    Conserved Domains (1) summary
    pfam04101
    Location:38 → 185
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  2. XM_020671324.1 → XP_020526983.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X3

    UniProtKB/TrEMBL
    W1PWL3
    Conserved Domains (1) summary
    pfam04101
    Location:33 → 180
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  3. XM_020671320.1 → XP_020526979.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X2

    Conserved Domains (1) summary
    pfam04101
    Location:38 → 185
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  4. XM_020671323.1 → XP_020526982.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X3

    UniProtKB/TrEMBL
    W1PWL3
    Conserved Domains (1) summary
    pfam04101
    Location:33 → 180
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  5. XM_020671314.1 → XP_020526973.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1

    Conserved Domains (1) summary
    pfam04101
    Location:48 → 195
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  6. XM_020671315.1 → XP_020526974.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1

    Conserved Domains (1) summary
    pfam04101
    Location:48 → 195
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  7. XM_011627475.2 → XP_011625777.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X4

    See identical proteins and their annotated locations for XP_011625777.1

    Conserved Domains (1) summary
    pfam04101
    Location:13 → 160
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  8. XM_011627476.2 → XP_011625778.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X4

    See identical proteins and their annotated locations for XP_011625778.1

    Conserved Domains (1) summary
    pfam04101
    Location:13 → 160
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  9. XM_020671327.1 → XP_020526986.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X4

    Conserved Domains (1) summary
    pfam04101
    Location:13 → 160
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  10. XM_020671326.1 → XP_020526985.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X4

    Conserved Domains (1) summary
    pfam04101
    Location:13 → 160
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  11. XM_020671321.1 → XP_020526980.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X2

    Conserved Domains (1) summary
    pfam04101
    Location:38 → 185
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  12. XM_020671317.1 → XP_020526976.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1

    Conserved Domains (1) summary
    pfam04101
    Location:48 → 195
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  13. XM_020671322.1 → XP_020526981.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X2

    Conserved Domains (1) summary
    pfam04101
    Location:38 → 185
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  14. XM_020671316.1 → XP_020526975.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1

    Conserved Domains (1) summary
    pfam04101
    Location:48 → 195
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  15. XM_020671318.1 → XP_020526977.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X2

    Conserved Domains (1) summary
    pfam04101
    Location:38 → 185
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  16. XM_011627477.2 → XP_011625779.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X4

    See identical proteins and their annotated locations for XP_011625779.1

    Conserved Domains (1) summary
    pfam04101
    Location:13 → 160
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  17. XM_020671325.1 → XP_020526984.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X4

    Conserved Domains (1) summary
    pfam04101
    Location:13 → 160
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  18. XM_020671313.1 → XP_020526972.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1

    Conserved Domains (1) summary
    pfam04101
    Location:48 → 195
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

RNA

  1. XR_002282048.1 RNA Sequence

  2. XR_002282047.1 RNA Sequence

  3. XR_002282046.1 RNA Sequence

Nucleotide Protein
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