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LOC18437339 dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [ Amborella trichopoda ]

Gene ID: 18437339, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18437339
Gene description
dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase
Locus tag
AMTR_s00014p00244840
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18437339 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499364.1 (5889762..5911011)

NW_006499364.1Genomic Context describing neighboring genes Neighboring gene dihydrolipoyl dehydrogenase, mitochondrial Neighboring gene uroporphyrinogen decarboxylase 1, chloroplastic Neighboring gene uncharacterized LOC110007548 Neighboring gene persulfide dioxygenase ETHE1 homolog, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006499364.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase
Names
putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006499364.1 Reference AMTR1.0 Primary Assembly

    Range
    5889762..5911011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020669126.1 → XP_020524785.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X2

    Conserved Domains (1) summary
    pfam04922
    Location:25 → 467
    DIE2_ALG10; DIE2/ALG10 family

  2. XM_020669127.1 → XP_020524786.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X2

    Conserved Domains (1) summary
    pfam04922
    Location:25 → 467
    DIE2_ALG10; DIE2/ALG10 family

  3. XM_020669128.1 → XP_020524787.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X2

    Conserved Domains (1) summary
    pfam04922
    Location:25 → 467
    DIE2_ALG10; DIE2/ALG10 family

  4. XM_020669125.1 → XP_020524784.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X2

    Conserved Domains (1) summary
    pfam04922
    Location:25 → 467
    DIE2_ALG10; DIE2/ALG10 family

  5. XM_020669129.1 → XP_020524788.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X2

    Conserved Domains (1) summary
    pfam04922
    Location:25 → 467
    DIE2_ALG10; DIE2/ALG10 family

  6. XM_020669130.1 → XP_020524789.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X2

    Conserved Domains (1) summary
    pfam04922
    Location:25 → 467
    DIE2_ALG10; DIE2/ALG10 family

  7. XM_020669131.1 → XP_020524790.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X3

    Conserved Domains (1) summary
    pfam04922
    Location:1 → 415
    DIE2_ALG10; DIE2/ALG10 family

  8. XM_020669132.1 → XP_020524791.1  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X4

    Conserved Domains (1) summary
    pfam04922
    Location:6 → 393
    DIE2_ALG10; DIE2/ALG10 family

  9. XM_011626218.2 → XP_011624520.2  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1

    Conserved Domains (1) summary
    pfam04922
    Location:110 → 552
    DIE2_ALG10; DIE2/ALG10 family
Nucleotide Protein
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