U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC18435636 cellulose synthase-like protein D1 [ Amborella trichopoda ]

Gene ID: 18435636, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC18435636
Gene description
cellulose synthase-like protein D1
Locus tag
AMTR_s00019p00246190
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC18435636 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006498608.1 (5994364..6000909)

NW_006498608.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110007371 Neighboring gene uncharacterized LOC18435635 Neighboring gene glutaredoxin-C4 Neighboring gene probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial Neighboring gene general transcription factor IIH subunit 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006498608.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cellulose synthase-like protein D1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006498608.1 Reference AMTR1.0 Primary Assembly

    Range
    5994364..6000909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020668064.1 → XP_020523723.1  cellulose synthase-like protein D1

    UniProtKB/TrEMBL
    W1PBW9
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1051
    PLN02248; cellulose synthase-like protein

  2. XM_006845679.2 → XP_006845742.1  cellulose synthase-like protein D1

    See identical proteins and their annotated locations for XP_006845742.1

    UniProtKB/TrEMBL
    W1PBW9
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1051
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases