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LOC18435261 GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [ Amborella trichopoda ]

Gene ID: 18435261, updated on 18-Sep-2024

Summary

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Gene symbol
LOC18435261
Gene description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
Locus tag
AMTR_s00019p00025160
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18435261 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006498608.1 (141546..162342)

NW_006498608.1Genomic Context describing neighboring genes Neighboring gene putative receptor-like protein kinase At1g80870 Neighboring gene lamin-like protein Neighboring gene APO protein 2, chloroplastic Neighboring gene early nodulin-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006498608.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006498608.1 Reference AMTR1.0 Primary Assembly

    Range
    141546..162342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006845299.3 → XP_006845362.1  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X1

    See identical proteins and their annotated locations for XP_006845362.1

    UniProtKB/TrEMBL
    W1PAV0
    Conserved Domains (2) summary
    cd03806
    Location:37 → 451
    GT1_ALG11_like; This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown ...
    PLN02949
    Location:1 → 464
    PLN02949; transferase, transferring glycosyl groups

  2. XM_020667942.1 → XP_020523601.1  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X2

    Conserved Domains (1) summary
    cl25780
    Location:1 → 263
    ALG11_N; ALG11 mannosyltransferase N-terminus
Nucleotide Protein
Heading Accession and Version

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