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LOC18433385 polygalacturonate 4-alpha-galacturonosyltransferase [ Amborella trichopoda ]

Gene ID: 18433385, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18433385
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Locus tag
AMTR_s00007p00049440
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18433385 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006498404.1 (455150..470239, complement)

NW_006498404.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110007205 Neighboring gene zinc transporter 6, chloroplastic Neighboring gene phosphoserine phosphatase, chloroplastic Neighboring gene ethylene-responsive transcription factor ABI4 Neighboring gene transfer RNA isoleucine (anticodon UAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006498404.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006498404.1 Reference AMTR1.0 Primary Assembly

    Range
    455150..470239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020666774.1 → XP_020522433.1  polygalacturonate 4-alpha-galacturonosyltransferase

    Conserved Domains (1) summary
    cl28622
    Location:76 → 675
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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