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LOC18432553 uncharacterized LOC18432553 [ Amborella trichopoda ]

Gene ID: 18432553, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18432553
Gene description
uncharacterized LOC18432553
Locus tag
AMTR_s00147p00102480
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18432553 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006498137.1 (1253550..1263849, complement)

NW_006498137.1Genomic Context describing neighboring genes Neighboring gene methylthioribose-1-phosphate isomerase Neighboring gene probable pectinesterase/pectinesterase inhibitor 36 Neighboring gene uncharacterized LOC18432555 Neighboring gene putative transcription elongation factor SPT5 homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006498137.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC18432553

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006498137.1 Reference AMTR1.0 Primary Assembly

    Range
    1253550..1263849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006842655.3 → XP_006842718.1  uncharacterized protein LOC18432553

    See identical proteins and their annotated locations for XP_006842718.1

    UniProtKB/TrEMBL
    W1P8Z1
    Conserved Domains (1) summary
    cd11296
    Location:392 → 555
    O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
Nucleotide Protein
Heading Accession and Version

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