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LOC18431074 galacturonosyltransferase 8 [ Amborella trichopoda ]

Gene ID: 18431074, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18431074
Gene description
galacturonosyltransferase 8
Locus tag
AMTR_s00135p00111710
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18431074 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497952.1 (1421305..1424661, complement)

NW_006497952.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene U-box domain-containing protein 13 Neighboring gene putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C Neighboring gene uncharacterized LOC110006982

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497952.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galacturonosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497952.1 Reference AMTR1.0 Primary Assembly

    Range
    1421305..1424661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006841205.3 → XP_006841268.1  galacturonosyltransferase 8

    See identical proteins and their annotated locations for XP_006841268.1

    UniProtKB/TrEMBL
    W1P4U2
    Conserved Domains (3) summary
    cd06429
    Location:251 → 548
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02523
    Location:1 → 561
    PLN02523; galacturonosyltransferase
    cl14813
    Location:99 → 185
    GluZincin; Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins)
Nucleotide Protein
Heading Accession and Version

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