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LOC18429865 ethylene-responsive transcription factor CRF1 [ Amborella trichopoda ]

Gene ID: 18429865, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18429865
Gene description
ethylene-responsive transcription factor CRF1
Locus tag
AMTR_s00097p00165740
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18429865 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497672.1 (2615217..2616873)

NW_006497672.1Genomic Context describing neighboring genes Neighboring gene mavicyanin Neighboring gene uncharacterized LOC105420308 Neighboring gene uncharacterized mitochondrial protein AtMg00860-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497672.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor CRF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497672.1 Reference AMTR1.0 Primary Assembly

    Range
    2615217..2616873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006839138.2 → XP_006839201.1  ethylene-responsive transcription factor CRF1

    See identical proteins and their annotated locations for XP_006839201.1

    UniProtKB/TrEMBL
    W1P490
    Conserved Domains (2) summary
    smart00380
    Location:125 → 187
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    pfam05839
    Location:251 → 311
    Apc13p; Apc13p protein
Nucleotide Protein
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