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LOC18428946 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Amborella trichopoda ]

Gene ID: 18428946, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18428946
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]
Locus tag
AMTR_s00103p00124340
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18428946 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497610.1 (1667348..1678517, complement)

NW_006497610.1Genomic Context describing neighboring genes Neighboring gene polygalacturonase Neighboring gene nudix hydrolase 24, chloroplastic-like Neighboring gene WAT1-related protein At5g64700 Neighboring gene WAT1-related protein At2g39510

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497610.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 3 [UDP-forming]; probable cellulose synthase A catalytic subunit 8 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497610.1 Reference AMTR1.0 Primary Assembly

    Range
    1667348..1678517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020664039.1 → XP_020519698.1  probable cellulose synthase A catalytic subunit 8 [UDP-forming] isoform X1

    Conserved Domains (1) summary
    PLN02638
    Location:30 → 1106
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit

  2. XM_006838242.3 → XP_006838305.1  cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X2

    See identical proteins and their annotated locations for XP_006838305.1

    UniProtKB/TrEMBL
    W1NZS3
    Conserved Domains (3) summary
    PLN02638
    Location:4 → 1088
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
    pfam14569
    Location:15 → 80
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:517 → 838
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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