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LOC18422500 callose synthase 7 [ Amborella trichopoda ]

Gene ID: 18422500, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18422500
Gene description
callose synthase 7
Locus tag
AMTR_s00011p00100920
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18422500 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
44
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006494910.1 (1229274..1324040, complement)

NW_006494910.1Genomic Context describing neighboring genes Neighboring gene peroxisomal and mitochondrial division factor 2 Neighboring gene uncharacterized LOC105420785 Neighboring gene 26S protease regulatory subunit 6A homolog Neighboring gene uncharacterized LOC110007317 Neighboring gene uncharacterized LOC110007296

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006494910.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 7; putative callose synthase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006494910.1 Reference AMTR1.0 Primary Assembly

    Range
    1229274..1324040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020667612.1 → XP_020523271.1  callose synthase 7 isoform X2

    Conserved Domains (3) summary
    pfam02364
    Location:1026 → 1796
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:57 → 179
    Vta1; Vta1 like
    pfam14288
    Location:318 → 429
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_020667619.1 → XP_020523278.1  callose synthase 7 isoform X3

    UniProtKB/TrEMBL
    W1NHC8
    Conserved Domains (3) summary
    pfam02364
    Location:1037 → 1780
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:57 → 179
    Vta1; Vta1 like
    pfam14288
    Location:329 → 440
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_020667607.1 → XP_020523266.1  putative callose synthase 6 isoform X1

    Conserved Domains (3) summary
    pfam02364
    Location:1037 → 1807
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:57 → 179
    Vta1; Vta1 like
    pfam14288
    Location:329 → 440
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  4. XM_020667627.1 → XP_020523286.1  putative callose synthase 6 isoform X4

    Conserved Domains (3) summary
    pfam02364
    Location:1037 → 1536
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:57 → 179
    Vta1; Vta1 like
    pfam14288
    Location:329 → 440
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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