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bgnt-1.4 [ Caenorhabditis elegans ]

Gene ID: 182795, updated on 11-Sep-2024

Summary

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Official Symbol
bgnt-1.4
Primary source
WormBase:WBGene00015982
Locus tag
CELE_C18G1.3
See related
AllianceGenome:WB:WBGene00015982
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable transferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Orthologous to human B4GAT1 (beta-1,4-glucuronyltransferase 1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: V
Exon count:
11
Sequence:
Chromosome: V; NC_003283.11 (4760974..4764060)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Guanyl-specific ribonuclease pgl-3 Neighboring gene ncRNA Neighboring gene L-Fucosyltransferase Neighboring gene FERM domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Carbohydrates and glycosylation. Berninsone PM. WormBook, 2006 Dec 18. PMID 18050430, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog;Glyco_trans_2-like domain-containing protein
NP_001256048.1
  • Confirmed by transcript evidence
NP_001256050.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4760974..4764060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269121.3 → NP_001256050.1  Glyco_trans_2-like domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256050.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D1YSH9
    Conserved Domains (1) summary
    pfam13896
    Location:1 → 189
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  2. NM_001269119.1 → NP_001256048.1  B3GNT1, Beta-1,3-N-acetylGucosamiNylTransferase 1, homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256048.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYW8
    Conserved Domains (1) summary
    pfam13896
    Location:83 → 382
    Glyco_transf_49; Glycosyl-transferase for dystroglycan
Nucleotide Protein
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