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LOC18105662 hevamine-A [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18105662, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18105662
Gene description
hevamine-A
Locus tag
POPTR_015G024200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18105662 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 15 NC_037299.2 (1806855..1807960)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 15 NC_037299.1 (1884517..1885633)

Chromosome 15 - NC_037299.2Genomic Context describing neighboring genes Neighboring gene acidic endochitinase Neighboring gene acidic endochitinase-like Neighboring gene uncharacterized LOC18105661 Neighboring gene probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 Neighboring gene receptor-like protein EIX2 Neighboring gene uncharacterized LOC18105657

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hevamine-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037299.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    1806855..1807960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006374252.3 → XP_006374314.1  hevamine-A

    See identical proteins and their annotated locations for XP_006374314.1

    UniProtKB/TrEMBL
    B9N9A5
    Conserved Domains (1) summary
    cd02877
    Location:27 → 294
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
Nucleotide Protein
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Molecular Biology Databases
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