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LOC18100581 class V chitinase [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18100581, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18100581
Gene description
class V chitinase
Locus tag
POPTR_006G188400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18100581 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (19547852..19549306)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (20312425..20313875)

Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7479548 Neighboring gene class V chitinase Neighboring gene 60S ribosomal protein L39 Neighboring gene ATPase 8, plasma membrane-type

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
class V chitinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    19547852..19549306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006381834.3 → XP_006381896.2  class V chitinase

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials