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LOC18097348 probable pectate lyase 16 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18097348, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18097348
Gene description
probable pectate lyase 16
Locus tag
POPTR_004G007300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18097348 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (439575..441280)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (453962..455601)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene stigma-specific STIG1-like protein 1 Neighboring gene stigma-specific STIG1-like protein 1 Neighboring gene uncharacterized LOC18097349 Neighboring gene probable WRKY transcription factor 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    439575..441280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006383821.3 → XP_006383883.1  probable pectate lyase 16

    See identical proteins and their annotated locations for XP_006383883.1

    UniProtKB/TrEMBL
    B9N8D5
    Conserved Domains (1) summary
    smart00656
    Location:119 → 314
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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