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LOC18096968 mitochondrial carnitine/acylcarnitine carrier-like protein [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18096968, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18096968
Gene description
mitochondrial carnitine/acylcarnitine carrier-like protein
Locus tag
POPTR_003G091500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC18096968 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 3 NC_037287.2 (11791506..11794429)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 3 NC_037287.1 (11875648..11878568)

Chromosome 3 - NC_037287.2Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 23 Neighboring gene uncharacterized LOC18096967 Neighboring gene uncharacterized LOC18096969 Neighboring gene abscisic acid receptor PYR1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037287.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    11791506..11794429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006385589.3 → XP_006385651.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    See identical proteins and their annotated locations for XP_006385651.1

    UniProtKB/TrEMBL
    B9N2N2
    Conserved Domains (1) summary
    pfam00153
    Location:206 → 297
    Mito_carr; Mitochondrial carrier protein

  2. XM_024598301.2 → XP_024454069.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    B9N2N2
    Conserved Domains (1) summary
    pfam00153
    Location:206 → 297
    Mito_carr; Mitochondrial carrier protein

  3. XM_024598302.2 → XP_024454070.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    B9N2N2
    Conserved Domains (1) summary
    pfam00153
    Location:206 → 297
    Mito_carr; Mitochondrial carrier protein

  4. XM_024598300.2 → XP_024454068.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    B9N2N2
    Conserved Domains (1) summary
    pfam00153
    Location:206 → 297
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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