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LOC18048820 isoamylase 2, chloroplastic [ Citrus x clementina ]

Gene ID: 18048820, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18048820
Gene description
isoamylase 2, chloroplastic
Locus tag
CICLE_v10023436mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18048820 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262339.1 (44830866..44834421)

NW_006262339.1Genomic Context describing neighboring genes Neighboring gene EID1-like F-box protein 3 Neighboring gene CSC1-like protein At4g02900 Neighboring gene protein PALE CRESS, chloroplastic Neighboring gene uncharacterized LOC112100408

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262339 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables isoamylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in starch biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoamylase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262339.1 Reference Citrus_clementina_v1.0

    Range
    44830866..44834421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024189740.1 → XP_024045508.1  isoamylase 2, chloroplastic

    UniProtKB/TrEMBL
    V4TV43
    Conserved Domains (2) summary
    cd02856
    Location:239 → 381
    E_set_GDE_Isoamylase_N; N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)
    cd11346
    Location:373 → 762
    AmyAc_plant_IsoA; Alpha amylase catalytic domain family found in plant isoamylases
Nucleotide Protein
Heading Accession and Version

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