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LOC18041466 non-lysosomal glucosylceramidase [ Citrus x clementina ]

Gene ID: 18041466, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18041466
Gene description
non-lysosomal glucosylceramidase
Locus tag
CICLE_v10000199mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18041466 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262201.1 (2303239..2310817, complement)

NW_006262201.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112098564 Neighboring gene mitogen-activated protein kinase kinase kinase 18 Neighboring gene glutamate formimidoyltransferase Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262201 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-lysosomal glucosylceramidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262201.1 Reference Citrus_clementina_v1.0

    Range
    2303239..2310817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024185014.1 → XP_024040782.1  non-lysosomal glucosylceramidase

    UniProtKB/TrEMBL
    V4T5D4
    Conserved Domains (2) summary
    pfam04685
    Location:530 → 890
    DUF608; Glycosyl-hydrolase family 116, catalytic region
    pfam12215
    Location:96 → 414
    Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Nucleotide Protein
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