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LOC18039831 probable pectate lyase 19 [ Citrus x clementina ]

Gene ID: 18039831, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18039831
Gene description
probable pectate lyase 19
Locus tag
CICLE_v10011763mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18039831 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262139.1 (24596412..24598556)

NW_006262139.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112097419 Neighboring gene small nucleolar RNA R71 Neighboring gene probable pectate lyase 19 Neighboring gene FACT complex subunit SSRP1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262139 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262139.1 Reference Citrus_clementina_v1.0

    Range
    24596412..24598556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006431025.2 → XP_006431088.1  probable pectate lyase 19

    See identical proteins and their annotated locations for XP_006431088.1

    UniProtKB/TrEMBL
    V4S9W4
    Conserved Domains (2) summary
    smart00656
    Location:160 → 355
    Amb_all; Amb_all domain
    pfam04431
    Location:24 → 74
    Pec_lyase_N; Pectate lyase, N terminus
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases