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LOC18039494 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Citrus x clementina ]

Gene ID: 18039494, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18039494
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Locus tag
CICLE_v10011021mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18039494 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262139.1 (20253262..20264947, complement)

NW_006262139.1Genomic Context describing neighboring genes Neighboring gene mitochondrial fission protein ELM1 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-2 Neighboring gene WD repeat-containing protein LWD1 Neighboring gene vacuolar protein sorting-associated protein 55 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262139 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262139.1 Reference Citrus_clementina_v1.0

    Range
    20253262..20264947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006430077.2 → XP_006430140.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X1

    See identical proteins and their annotated locations for XP_006430140.1

    UniProtKB/TrEMBL
    V4SWG2
    Conserved Domains (6) summary
    COG0457
    Location:177 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:334 → 362
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:334 → 367
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:51 → 113
    TPR_11; TPR repeat
    pfam13424
    Location:112 → 188
    TPR_12; Tetratricopeptide repeat
    cl10013
    Location:488 → 846
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

  2. XM_024181581.1 → XP_024037349.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:44 → 318
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:184 → 716
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:201 → 229
    TPR; TPR repeat [structural motif]

RNA

  1. XR_002904823.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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