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LOC18037204 carbamoyl-phosphate synthase small chain, chloroplastic [ Citrus x clementina ]

Gene ID: 18037204, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18037204
Gene description
carbamoyl-phosphate synthase small chain, chloroplastic
Locus tag
CICLE_v10025660mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18037204 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262075.1 (17207836..17211555, complement)

NW_006262075.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL78 Neighboring gene actin-7 Neighboring gene 50S ribosomal protein L15 Neighboring gene protein transport protein Sec61 subunit beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262075 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in arginine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glutamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of carbamoyl-phosphate synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbamoyl-phosphate synthase small chain, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262075.1 Reference Citrus_clementina_v1.0

    Range
    17207836..17211555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006427794.2 → XP_006427857.1  carbamoyl-phosphate synthase small chain, chloroplastic

    See identical proteins and their annotated locations for XP_006427857.1

    UniProtKB/TrEMBL
    V4SKA1
    Conserved Domains (3) summary
    cd01744
    Location:244 → 420
    GATase1_CPSase; Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II
    PLN02771
    Location:1 → 416
    PLN02771; carbamoyl-phosphate synthase (glutamine-hydrolyzing)
    pfam00988
    Location:58 → 185
    CPSase_sm_chain; Carbamoyl-phosphate synthase small chain, CPSase domain
Nucleotide Protein
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