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LOC18033865 probable xyloglucan endotransglucosylase/hydrolase protein 10 [ Citrus x clementina ]

Gene ID: 18033865, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18033865
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 10
Locus tag
CICLE_v10029863mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC18033865 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262022.1 (1597560..1598788, complement)

NW_006262022.1Genomic Context describing neighboring genes Neighboring gene squalene monooxygenase Neighboring gene uncharacterized LOC18034248 Neighboring gene uncharacterized LOC18034242 Neighboring gene dentin sialophosphoprotein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262022 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262022.1 Reference Citrus_clementina_v1.0

    Range
    1597560..1598788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006422663.2 → XP_006422726.1  probable xyloglucan endotransglucosylase/hydrolase protein 10

    See identical proteins and their annotated locations for XP_006422726.1

    UniProtKB/TrEMBL
    V4SG22
    Conserved Domains (2) summary
    PLN03161
    Location:24 → 300
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cd02176
    Location:38 → 299
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases