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LOC18028106 isoamylase 1, chloroplastic [ Eutrema salsugineum ]

Gene ID: 18028106, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18028106
Gene description
isoamylase 1, chloroplastic
Locus tag
EUTSA_v10016275mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18028106 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256908.1 (10503693..10509070)

NW_006256908.1Genomic Context describing neighboring genes Neighboring gene LIM domain-containing protein WLIM2a Neighboring gene uncharacterized protein At2g39910 Neighboring gene uncharacterized protein At2g39920 Neighboring gene coronatine-insensitive protein 1 Neighboring gene myb-like protein U

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256908 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoamylase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256908.1 Reference Eutsalg1_0

    Range
    10503693..10509070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006411174.2 → XP_006411237.1  isoamylase 1, chloroplastic

    See identical proteins and their annotated locations for XP_006411237.1

    UniProtKB/TrEMBL
    V4LQ45
    Conserved Domains (3) summary
    cd02856
    Location:79 → 226
    E_set_GDE_Isoamylase_N; N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)
    cd11326
    Location:207 → 660
    AmyAc_Glg_debranch; Alpha amylase catalytic domain found in glycogen debranching enzymes
    COG1523
    Location:73 → 753
    PulA; Pullulanase/glycogen debranching enzyme [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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