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LOC18028076 callose synthase 2 [ Eutrema salsugineum ]

Gene ID: 18028076, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18028076
Gene description
callose synthase 2
Locus tag
EUTSA_v10016125mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18028076 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256908.1 (6613487..6625308)

NW_006256908.1Genomic Context describing neighboring genes Neighboring gene putative defensin-like protein 9 Neighboring gene GTP 3',8-cyclase, mitochondrial Neighboring gene DNA repair protein RAD50 Neighboring gene cysteine proteinase inhibitor 2 Neighboring gene probable xyloglucan galactosyltransferase GT15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256908 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256908.1 Reference Eutsalg1_0

    Range
    6613487..6625308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006410268.2 → XP_006410331.1  callose synthase 2 isoform X1

    See identical proteins and their annotated locations for XP_006410331.1

    UniProtKB/TrEMBL
    V4KF27, V4M682
    Conserved Domains (3) summary
    pfam02364
    Location:1048 → 1804
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:47 → 169
    Vta1; Vta1 like
    pfam14288
    Location:318 → 430
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_024161058.1 → XP_024016826.1  callose synthase 2 isoform X2

    UniProtKB/TrEMBL
    V4KF27
    Conserved Domains (4) summary
    pfam01757
    Location:1643 → 1815
    Acyl_transf_3; Acyltransferase family
    pfam02364
    Location:936 → 1692
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:8 → 57
    Vta1; Vta1 like
    pfam14288
    Location:205 → 318
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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