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LOC18019487 beta-D-xylosidase 3 [ Eutrema salsugineum ]

Gene ID: 18019487, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18019487
Gene description
beta-D-xylosidase 3
Locus tag
EUTSA_v10012739mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18019487 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (3056869..3059807, complement)

NW_006256829.1Genomic Context describing neighboring genes Neighboring gene cytochrome b5 domain-containing protein RLF Neighboring gene magnesium transporter MRS2-7 Neighboring gene histone acetyltransferase of the MYST family 2 Neighboring gene transcription factor HEC3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylan 1,4-beta-xylosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arabinan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-D-xylosidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256829.1 Reference Eutsalg1_0

    Range
    3056869..3059807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006399392.2 → XP_006399455.1  beta-D-xylosidase 3

    See identical proteins and their annotated locations for XP_006399455.1

    UniProtKB/TrEMBL
    V4LM42
    Conserved Domains (3) summary
    PLN03080
    Location:19 → 779
    PLN03080; Probable beta-xylosidase; Provisional
    pfam14310
    Location:703 → 770
    Fn3-like; Fibronectin type III-like domain
    cl07971
    Location:65 → 372
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
Nucleotide Protein
Heading Accession and Version

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