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LOC18018508 laccase-17 [ Eutrema salsugineum ]

Gene ID: 18018508, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18018508
Gene description
laccase-17
Locus tag
EUTSA_v10013109mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18018508 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (8210397..8212875, complement)

NW_006256829.1Genomic Context describing neighboring genes Neighboring gene putative F-box protein At5g60060 Neighboring gene BTB/POZ domain-containing protein At5g60050 Neighboring gene DNA-directed RNA polymerase III subunit 1 Neighboring gene nucleolar protein 58 Neighboring gene putative respiratory burst oxidase homolog protein H Neighboring gene uncharacterized LOC18018510

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256829.1 Reference Eutsalg1_0

    Range
    8210397..8212875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006400826.2 → XP_006400889.1  laccase-17

    See identical proteins and their annotated locations for XP_006400889.1

    UniProtKB/TrEMBL
    V4LIT5
    Conserved Domains (4) summary
    cd13849
    Location:27 → 143
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:158 → 306
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:418 → 555
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:22 → 572
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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