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LOC18015532 laccase-6 [ Eutrema salsugineum ]

Gene ID: 18015532, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18015532
Gene description
laccase-6
Locus tag
EUTSA_v10001377mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18015532 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256812.1 (1276232..1278533)

NW_006256812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18015531 Neighboring gene uncharacterized LOC112086213 Neighboring gene pyridoxine/pyridoxamine 5'-phosphate oxidase 2 Neighboring gene dof zinc finger protein DOF2.5 Neighboring gene calcium-binding protein KIC Neighboring gene serine/arginine-rich splicing factor RS31A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256812 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256812.1 Reference Eutsalg1_0

    Range
    1276232..1278533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006397787.2 → XP_006397850.1  laccase-6

    See identical proteins and their annotated locations for XP_006397850.1

    UniProtKB/TrEMBL
    V4LHN8
    Conserved Domains (4) summary
    cd13849
    Location:34 → 150
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:165 → 312
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:413 → 552
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:29 → 569
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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