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LOC18012570 beta-D-xylosidase 4 [ Eutrema salsugineum ]

Gene ID: 18012570, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18012570
Gene description
beta-D-xylosidase 4
Locus tag
EUTSA_v10003678mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18012570 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256547.1 (1212548..1216346)

NW_006256547.1Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase 38 Neighboring gene probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic Neighboring gene magnesium transporter MRS2-2 Neighboring gene uncharacterized LOC112083527

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256547 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylan 1,4-beta-xylosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arabinan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-D-xylosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256547.1 Reference Eutsalg1_0

    Range
    1212548..1216346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006394074.2 → XP_006394136.1  beta-D-xylosidase 4

    See identical proteins and their annotated locations for XP_006394136.1

    UniProtKB/TrEMBL
    V4KNB0
    Conserved Domains (3) summary
    PLN03080
    Location:19 → 780
    PLN03080; Probable beta-xylosidase; Provisional
    pfam14310
    Location:704 → 771
    Fn3-like; Fibronectin type III-like domain
    cl07971
    Location:68 → 365
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
Nucleotide Protein
Heading Accession and Version

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