U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

T04H1.5 G patch domain-containing protein 11 [ Caenorhabditis elegans ]

Gene ID: 179679, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
T04H1.5
Official Full Name
G patch domain-containing protein 11
Primary source
WormBase:WBGene00011451
Locus tag
CELE_T04H1.5
See related
AllianceGenome:WB:WBGene00011451
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable nucleic acid binding activity. Predicted to be active in kinetochore. Orthologous to human GPATCH11 (G-patch domain containing 11). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See T04H1.5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (12251341..12252407)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DNA repair protein rad-50;Zinc-hook domain-containing protein Neighboring gene LRP X(cross)-hybridizing Neighboring gene Activin_recp domain-containing protein Neighboring gene Putative UDP-glucuronosyltransferase ugt-55

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
G patch domain-containing protein 11
NP_506071.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12251341..12252407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073670.7 → NP_506071.1  G patch domain-containing protein 11 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506071.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22178
    Conserved Domains (2) summary
    pfam01585
    Location:73 → 120
    G-patch; G-patch domain
    pfam13821
    Location:240 → 284
    DUF4187; Domain of unknown function (DUF4187)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools