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LOC17900430 probable sucrose-phosphate synthase 3 [ Capsella rubella ]

Gene ID: 17900430, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17900430
Gene description
probable sucrose-phosphate synthase 3
Locus tag
CARUB_v10008160mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17900430 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (1466875..1471330, complement)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17896716 Neighboring gene O-fucosyltransferase 1 Neighboring gene ESX-1 secretion-associated protein EspI Neighboring gene protein TIC 20-I, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sucrose-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable sucrose-phosphate synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    1466875..1471330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006306584.2 → XP_006306646.1  probable sucrose-phosphate synthase 3

    See identical proteins and their annotated locations for XP_006306646.1

    UniProtKB/TrEMBL
    R0IAW3
    Conserved Domains (2) summary
    cd03800
    Location:171 → 673
    GT1_Sucrose_synthase; This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose ...
    TIGR02468
    Location:1 → 1060
    sucrsPsyn_pln; sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant
Nucleotide Protein
Heading Accession and Version

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