U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC17900129 probable pectate lyase 1 [ Capsella rubella ]

Gene ID: 17900129, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC17900129
Gene description
probable pectate lyase 1
Locus tag
CARUB_v10009197mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (1374504..1378644, complement)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene glycine-rich protein 5 Neighboring gene uncharacterized LOC17896836 Neighboring gene probable voltage-gated potassium channel subunit beta Neighboring gene serine/threonine-protein kinase EDR1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable pectate lyase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    1374504..1378644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006307513.2 → XP_006307575.1  probable pectate lyase 1

    See identical proteins and their annotated locations for XP_006307575.1

    UniProtKB/TrEMBL
    R0ISX7
    Conserved Domains (2) summary
    smart00656
    Location:155 → 350
    Amb_all; Amb_all domain
    pfam13229
    Location:187 → 276
    Beta_helix; Right handed beta helix region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases