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LOC17898670 probable beta-1,4-xylosyltransferase IRX10 [ Capsella rubella ]

Gene ID: 17898670, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17898670
Gene description
probable beta-1,4-xylosyltransferase IRX10
Locus tag
CARUB_v10009184mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17898670 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (9367372..9369708, complement)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17898410 Neighboring gene uncharacterized LOC17898803 Neighboring gene adenine phosphoribosyltransferase 1, chloroplastic Neighboring gene protein NPGR1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    9367372..9369708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006307500.2 → XP_006307562.1  probable beta-1,4-xylosyltransferase IRX10

    See identical proteins and their annotated locations for XP_006307562.1

    UniProtKB/TrEMBL
    R0IP53
    Conserved Domains (1) summary
    pfam03016
    Location:67 → 362
    Exostosin; Exostosin family
Nucleotide Protein
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