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LOC17898386 granule-bound starch synthase 1, chloroplastic/amyloplastic [ Capsella rubella ]

Gene ID: 17898386, updated on 18-Sep-2024

Summary

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Gene symbol
LOC17898386
Gene description
granule-bound starch synthase 1, chloroplastic/amyloplastic
Locus tag
CARUB_v10008624mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17898386 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (11582297..11585556, complement)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase IRK Neighboring gene leucine-rich repeat protein FLOR 1 Neighboring gene putative wall-associated receptor kinase-like 11 Neighboring gene uncharacterized LOC17897959

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    11582297..11585556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006306971.2 → XP_006307033.1  granule-bound starch synthase 1, chloroplastic/amyloplastic

    See identical proteins and their annotated locations for XP_006307033.1

    UniProtKB/TrEMBL
    R0GVH4, R0GVU6
    Conserved Domains (2) summary
    cd03791
    Location:81 → 576
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:78 → 579
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
Heading Accession and Version

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