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LOC17897648 pectinesterase/pectinesterase inhibitor 18 [ Capsella rubella ]

Gene ID: 17897648, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17897648
Gene description
pectinesterase/pectinesterase inhibitor 18
Locus tag
CARUB_v10008769mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17897648 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (3979102..3981290)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2B Neighboring gene uncharacterized LOC17898314 Neighboring gene protein CER1-like 1 Neighboring gene tryptophan synthase beta chain 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase/pectinesterase inhibitor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    3979102..3981290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006307114.2 → XP_006307176.1  pectinesterase/pectinesterase inhibitor 18

    See identical proteins and their annotated locations for XP_006307176.1

    UniProtKB/TrEMBL
    R0IC93
    Conserved Domains (3) summary
    PLN02301
    Location:1 → 547
    PLN02301; pectinesterase/pectinesterase inhibitor
    cd15799
    Location:47 → 197
    PMEI-like_4; plant invertase/pectin methylesterase inhibitor domain-containing protein
    pfam01095
    Location:236 → 532
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version

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