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LOC17897551 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [ Capsella rubella ]

Gene ID: 17897551, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17897551
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5
Locus tag
CARUB_v10011725mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17897551 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (2961143..2963821)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene amidase 1 Neighboring gene amidase 1-like Neighboring gene uncharacterized LOC111832515 Neighboring gene mitogen-activated protein kinase kinase kinase ANP1 Neighboring gene mannosylglycoprotein endo-beta-mannosidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    2961143..2963821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023789203.1 → XP_023644971.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5

    UniProtKB/TrEMBL
    R0GTF4
Nucleotide Protein
Heading Accession and Version

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