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LOC17896873 hydroxyproline O-galactosyltransferase GALT4 [ Capsella rubella ]

Gene ID: 17896873, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17896873
Gene description
hydroxyproline O-galactosyltransferase GALT4
Locus tag
CARUB_v10008510mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17896873 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (8546105..8549202, complement)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat protein 38 Neighboring gene glutathione S-transferase U13 Neighboring gene serine/threonine-protein phosphatase PP2A-2 catalytic subunit Neighboring gene probable thionin-2.4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    8546105..8549202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006306881.2 → XP_006306943.1  hydroxyproline O-galactosyltransferase GALT4

    See identical proteins and their annotated locations for XP_006306943.1

    UniProtKB/TrEMBL
    R0GVK8
    Conserved Domains (2) summary
    pfam00337
    Location:186 → 388
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:436 → 616
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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