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LOC17894935 beta-galactosidase 17 [ Capsella rubella ]

Gene ID: 17894935, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17894935
Gene description
beta-galactosidase 17
Locus tag
CARUB_v10022320mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Also known as
AT5G27395
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Genomic context

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See LOC17894935 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238922.1 (10991814..10996847, complement)

NW_006238922.1Genomic Context describing neighboring genes Neighboring gene protein HOTHEAD Neighboring gene LOB domain-containing protein 7 Neighboring gene abscisic acid receptor PYL3 Neighboring gene inorganic pyrophosphatase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238922 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. Zeng L, et al. New Phytol, 2017 May. PMID 28294342

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238922.1 Reference Caprub1_0

    Range
    10991814..10996847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023787702.1 → XP_023643470.1  beta-galactosidase 17 isoform X2

  2. XM_023787703.1 → XP_023643471.1  beta-galactosidase 17 isoform X3

  3. XM_006301788.2 → XP_006301850.1  beta-galactosidase 17 isoform X1

    See identical proteins and their annotated locations for XP_006301850.1

    UniProtKB/TrEMBL
    R0IDI0
    Conserved Domains (2) summary
    pfam01301
    Location:65 → 389
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:595 → 659
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases