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LOC17894929 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 [ Capsella rubella ]

Gene ID: 17894929, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17894929
Gene description
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3
Locus tag
CARUB_v10021691mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17894929 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238922.1 (3387668..3390699)

NW_006238922.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17895837 Neighboring gene uncharacterized LOC17895310 Neighboring gene uncharacterized LOC111831871 Neighboring gene disease resistance protein ADR2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238922 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238922.1 Reference Caprub1_0

    Range
    3387668..3390699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006300354.2 → XP_006300416.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3

    See identical proteins and their annotated locations for XP_006300416.1

    UniProtKB/TrEMBL
    R0HTX5
    Conserved Domains (1) summary
    pfam03407
    Location:116 → 337
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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