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LOC17894797 beta-1,3-galactosyltransferase 7 [ Capsella rubella ]

Gene ID: 17894797, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17894797
Gene description
beta-1,3-galactosyltransferase 7
Locus tag
CARUB_v10021555mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17894797 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238922.1 (12885753..12888406, complement)

NW_006238922.1Genomic Context describing neighboring genes Neighboring gene putative glucan endo-1,3-beta-glucosidase GVI Neighboring gene uncharacterized LOC17894394 Neighboring gene uncharacterized LOC17895860 Neighboring gene probable eukaryotic translation initiation factor 5-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238922 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238922.1 Reference Caprub1_0

    Range
    12885753..12888406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023787666.1 → XP_023643434.1  beta-1,3-galactosyltransferase 7 isoform X1

  2. XM_006301095.2 → XP_006301157.1  beta-1,3-galactosyltransferase 7 isoform X2

    See identical proteins and their annotated locations for XP_006301157.1

    UniProtKB/TrEMBL
    R0I7L5
    Conserved Domains (3) summary
    PLN03193
    Location:6 → 392
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:11 → 104
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:140 → 338
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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