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LOC17894060 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [ Capsella rubella ]

Gene ID: 17894060, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17894060
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
Locus tag
CARUB_v10019782mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17894060 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238922.1 (2098573..2102589)

NW_006238922.1Genomic Context describing neighboring genes Neighboring gene putative potassium transporter 12 Neighboring gene glycine-rich RNA-binding protein 7-like Neighboring gene jacalin-related lectin 17 Neighboring gene jacalin-related lectin 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238922 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238922.1 Reference Caprub1_0

    Range
    2098573..2102589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006300331.2 → XP_006300393.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    See identical proteins and their annotated locations for XP_006300393.1

    UniProtKB/TrEMBL
    R0GCG4
    Conserved Domains (3) summary
    cd03788
    Location:62 → 545
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:1 → 843
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:595 → 830
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
Heading Accession and Version

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