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LOC17893880 probable pectate lyase 7 [ Capsella rubella ]

Gene ID: 17893880, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17893880
Gene description
probable pectate lyase 7
Locus tag
CARUB_v10016149mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17893880 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (283048..285131)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene hypersensitive-induced response protein 3 Neighboring gene mitochondrial outer membrane protein porin 1 Neighboring gene uncharacterized LOC17891651 Neighboring gene uncharacterized LOC17892786

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    283048..285131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006299876.2 → XP_006299938.1  probable pectate lyase 7

    See identical proteins and their annotated locations for XP_006299938.1

    UniProtKB/TrEMBL
    R0GB74
    Conserved Domains (2) summary
    smart00656
    Location:196 → 391
    Amb_all; Amb_all domain
    pfam04431
    Location:28 → 101
    Pec_lyase_N; Pectate lyase, N terminus
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases