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LOC17893804 glucan endo-1,3-beta-glucosidase 4 [ Capsella rubella ]

Gene ID: 17893804, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17893804
Gene description
glucan endo-1,3-beta-glucosidase 4
Locus tag
CARUB_v10013514mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17893804 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (4508239..4511168, complement)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111831374 Neighboring gene constitutive photomorphogenesis protein 10 Neighboring gene serine/arginine-rich SC35-like splicing factor SCL30A Neighboring gene IQ domain-containing protein IQM2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    4508239..4511168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006297433.2 → XP_006297495.1  glucan endo-1,3-beta-glucosidase 4

    See identical proteins and their annotated locations for XP_006297495.1

    UniProtKB/TrEMBL
    R0I211
    Conserved Domains (2) summary
    smart00768
    Location:361 → 446
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:26 → 345
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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