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LOC17893781 S-alkyl-thiohydroximate lyase SUR1 [ Capsella rubella ]

Gene ID: 17893781, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17893781
Gene description
S-alkyl-thiohydroximate lyase SUR1
Locus tag
CARUB_v10013645mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17893781 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (14862061..14864312, complement)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111831682 Neighboring gene uncharacterized LOC17890878 Neighboring gene probable protein phosphatase 2C 58 Neighboring gene mitotic checkpoint serine/threonine-protein kinase BUB1 Neighboring gene transmembrane E3 ubiquitin-protein ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-alkyl-thiohydroximate lyase SUR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    14862061..14864312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006297563.2 → XP_006297625.1  S-alkyl-thiohydroximate lyase SUR1

    See identical proteins and their annotated locations for XP_006297625.1

    UniProtKB/TrEMBL
    R0I2I0
    Conserved Domains (2) summary
    cd00609
    Location:71 → 435
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    PLN02187
    Location:1 → 464
    PLN02187; rooty/superroot1
Nucleotide Protein
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