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LOC17893518 hydroxyproline O-galactosyltransferase GALT3 [ Capsella rubella ]

Gene ID: 17893518, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17893518
Gene description
hydroxyproline O-galactosyltransferase GALT3
Locus tag
CARUB_v10013222mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17893518 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (2001511..2004488, complement)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g06430, chloroplastic Neighboring gene uncharacterized LOC17892742 Neighboring gene probable boron transporter 3 Neighboring gene elongation of fatty acids protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    2001511..2004488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006297151.2 → XP_006297213.1  hydroxyproline O-galactosyltransferase GALT3

    See identical proteins and their annotated locations for XP_006297213.1

    UniProtKB/TrEMBL
    R0G426
    Conserved Domains (3) summary
    PLN03133
    Location:19 → 622
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    pfam00337
    Location:171 → 344
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:389 → 567
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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